GENEMAPPER V4.0 PDF

5 0 pm, 4. GeneMapper® Software Version SNPlex™ System Analysis Getting Started Guide v. Preface ix. How to Use This Guide. described in the GeneMapper® Software Version Installation and Administration For example: Type 0, then press Enter for each of the remaining fields. features of Data Collection v Software* on Series provided with the GeneMapper® software .. GeneMapper® Software v to v Server Upgrade .

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Installation Options for the Option 1: Install the Day Demo Software Option 2: Install the Full Version of on a Universal Option 6: Install the on a Geneemapper Option 7: Install the Generic Updater Option 8: Install the Full Version of on a Option 9: Install the on a Option Install the Server on a Upgrade Scenarios for The full client-server functionality available in the GeneMapper increases the genemspper options for Applied Biosystems customers.

The purpose of this user bulletin is to clarify these installation options by providing 10 different options, including one for a day demonstration package designed to help you determine if your current computer configuration supports.

GeneMapper. Software Version LOH Analysis Getting Started Guide (PN Rev. B) – PDF

This bulletin also provides a variety of scenarios you can use to determine which option or combination of options best suits your needs.

This bulletin does not describe how to install the GeneMapper.

For instructions on installing and managing the software, see the Installation and Administration Guide PN. New Features of Version 4. Microsatellite Scoring The following improvements expand the software s ability to analyze microsatellites: Marker-specific analysis Specific markers can use analysis methods independent of the other markers in a chemistry kit.

For example, if one trinucleotide has a peculiar stutter pattern, you can analyze that trinucleotide using a specific analysis method, while analyzing the other trinucleotides using the default analysis method. Universal markers During analysis, several panels within the same kit can share a marker.

Changes to the marker in one panel will be reflected in other panels, allowing new alleles to be available in all panels.

GeneMapper. Software Version 4.0 LOH Analysis Getting Started Guide (PN Rev. B)

The GeneMapper server computer only stores data and methods; all analysis is performed on the client computer. If you have a GeneMapper Software server already, before purchasing the client, you can use the Day Demo software to confirm that the target computer genemappe connect to the GeneMapper Software server see Using the Demo Software to Test a -Server Connection on page Table 1 shows which GeneMapper Software products provide Oracle licenses.

One Oracle license is provided with each full installation and server installation of the GeneMapper. Each Oracle license allows genempaper named users to use a database server.

For example, if there are 20 named users, four Oracle licenses are required. Figure 1 shows the following example: For example, two computers running GeneMapper Software v3. If you upgrade the GeneMapper Software to v4. There are eight options for installing or upgrading the GeneMapper, one option for installing a day demonstration version of the GeneMapper Software, and one option for installing the generic updater which provides minimal GeneMapper functionality without installing the GeneMapper Software.

You can install a combination of different options in order to optimize the workflow genemappeg your laboratory. For more information, see Upgrade Scenarios for on page Installation CDs To support the multiple configuration options, five different installation CDs are available: Full Installation Options 5 and 8 The Full Installation CD installs both the client and server software database on the target computer. You can install the software on any compatible computer including one running Software.

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The client and server are installed as a single, integrated package and cannot be installed separately or on separate computers. The Upgrade CD installs both the client and server software database on the target computer. You can install the client on any compatible computer including one running Data Collection Software and can connect to a GeneMapper Software server on the same LAN subnet.

Server Installation Option 10 The Software v4. You cannot install the GeneMapper Software server on a computer running Software. Any client on the same LAN subnet genekapper connect with the server. You can install gfnemapper software on any compatible stand-alone computer. The demo software functions for 30 days from the date it is first used. Decision Tree Comparing the Options Figure 2 on page 7 is a flowchart to help you make decisions about which of the installation options to choose.

Table 2 on page 8 shows a comparison of the available installation options. Option 2 Remove v1. NO Are you upgrading the Software on a data collection computer? NO YES your options are: Genemappper 5 Install the full version on a data collection computer your options are: Option 8 Install the full version on a fenemapper computer your option is: Option 3 Upgrade v3. Option 4 Upgrade v3. Multiple genempaper can connect to the server; however, if more than five clients are simultaneously connected, there may be a noticeable decrease in performance.

When a server is installed on a data genempper computer, only one client can connect at a time. Therefore, Applied Biosystems recommends that you do not use a data collection computer as the central server in a client-server system. If autoanalysis was enabled in the previous version. If you enable autoanalysis during installation. You cannot enable autoanalysis after the software is installed.

Install the Day Demo Software Expires in 30 days Upgrade previous version of GeneMapper Software Install on same computer as Software installed Server software database installed Server software database Number of server connections 1 Autoanalysis enabled The client and server are installed as a single, integrated package and cannot gehemapper installed separately or on separate computers.

The demonstration version of the GeneMapper is a fully functional version of the software. It can connect to any server on the LAN subnet to download data, analyze the data, then upload it back to the server the co-installed server is the default. You do not need to uninstall the day demo if you decide to purchase the full version of the GeneMapper Software. The Full Installation CD allows you to register the software without losing any data and analysis results you imported into the demo.

If you decide not to purchase the full version, you can completely uninstall the demo. Installing the demonstration version of the GeneMapper Software requires that: Software is not installed on the target computer. GeneMapper Software is not installed on the target computer. The demonstration software installs with the following restrictions: The software functions for 30 days from the date it is first used. The Database Dashboard utility a tool for maintaining the database and monitoring its usage is not installed.

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The preset analysis methods are not installed, but yenemapper available for importing from one of the installation folders. Documentation is provided in PDF format only no hardcopy documents.

If the demo version of the GeneMapper Software can connect to the target server, the client should also be able to connect to the server.

Uninstall the demonstration version of the software before installing the client version of the GeneMapper Software. If you want to install version 4. Any manual calls will be saved and imported along with the project.

When saving projects, do not use the Export Reference Data option. GeneMapper cannot import the following items from Genemmapper Software v1. Analysis methods Table settings Size standard definitions Plot settings 2. Uninstall GeneMapper Software v1. When you upgrade v3. All projects and data are upgraded in their current locations. You can import projects undertaken with earlier versions of the GeneMapper Software. Any previously edited genotypes are retained.

Genemspper cannot upgrade version 1. You have a new registration code the new code is attached to the software license agreement You delete and reimport the factory table and plot settings. You recreate any table settings, plot settings, size standards, and analysis methods you want to use that were created using the GeneMapper Software v1. Table settings, plot settings, size standards, and analysis methods created in versions 1. For SNPlex Systems only: You reanalyze projects that were imported from earlier versions of the GeneMapper Software to take advantage vv4.0 the full functionality of the Study Manager.

If you manually edited Study Manager samples and you want to retain those calls for reference, you duplicate the project prior to reanalysis using the Save As command in the GeneMapper Manager project tab. Autoanalysis of Data Upgrading Multiple s If autoanalysis was enabled in the previous version of the GeneMapper Software, the upgraded software can also perform automatic analysis of data.

During autoanalysis, the GeneMapper Software can save the analyzed data to a server on a different computer from the one performing the autoanalysis the co-installed server is the default. If gfnemapper instruments are available, you can specify only one of them when setting up an autoanalysis run. If you have multiple computers running the GeneMapper Software, you may want to purchase and install client versions of the software for some of the computers, instead of upgrades.

See the upgrade scenario Multiple Capabilities Upgrade on page The GeneMapper can connect to any server on the LAN subnet to download data, analyze the data, then upload it back to the server the co-installed server is the default. Upgrading the GeneMapper Software on a data collection computer requires that: Install the Full Version of on a Universal Upgrade previous version of GeneMapper Software Install on same computer as Software installed Server software database Universal Software Server software database installed Number of server connections 1 Autoanalysis enabled The client and server are installed as a single, integrated package and cannot be installed separately or on separate computers.

You do not need to install the full version of GeneMapper 4v.0 v4. For more information, see Option 6 on page 17, or Option 7 on page User Bulletin.

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